PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18473s0395.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 455aa    MW: 50478.4 Da    PI: 9.7602
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18473s0395.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-066890123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          + C++C+k F+r  nL+ H r H
  Bostr.18473s0395.1.p 68 FICEICNKGFKRDQNLQLHRRGH 90
                          89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-76790No hitNo description
Gene3DG3DSA:3.30.160.605.3E-66790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121711.7E-56890IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8666890IPR007087Zinc finger, C2H2
SMARTSM003550.0116890IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM00355120110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-4133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.12E-7140165No hitNo description
SMARTSM00355200145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MMMPDDHHHL SFPSYVLHQE HITPNPNPNP NPTSSNSAKR KRNLPGNPDP DAEVIALSPN  60
SLMATNRFIC EICNKGFKRD QNLQLHRRGH NLPWKLKQRT NKDQVKKKVY ICPEKTCVHH  120
DAARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTR EYRCDCGTLF  180
SRKDSFITHR AFCDALAEES ARFVSVPPAA AAAASTYLNN APDAEVNLGN INPNHQHGQL  240
NTTSSQVLDQ PGFNIHRNNI AFLGQTFTNE LPLPTNVLAS PSPRSASNSL QNLWHLQGQS  300
SHQWLLNENN NNNILQRGIS KNEEEHEIKK VTSSGSLFSS EARNSTNNYN QNGGQIASMS  360
ATALLQKAAQ MGSKRSSSSS NNSKAFGLMT SSIFNNKQTE NIKTKDFDEG GFTRDFLGVG  420
SQHQPWPLLM VNHNLPDSSP PATVNGTPTA DRNQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010503173.10.0PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ944L30.0IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLD7LNN70.0D7LNN7_ARALL; Zinc finger family protein
STRINGscaffold_501386.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.10.0C2H2-like zinc finger protein